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Tuberculosis 2007 687 pages Download PDF, 8.3 MB Home Preface 1. History 2. Molecular Evolution 3. Clinical Bacteriology 4. Genomics and Proteomics 5. Immunology/Pathogenesis 6. Host genetics 7. Epidemiology 8. Other M. tuberculosis 9. Molecular Epidemiology 10. New Vaccines 11. Biosafety/Hospital Control 12. Diagnostic Methods 13. Immunological Diagnosis 14. New Diagnostic Methods 15. Tuberculosis in Adults 16. Tuberculosis in Children 17. Tuberculosis and HIV/AIDS 18. Treatment and Drugs 19. Drug Resistance 20. New Perspectives Comments and Suggestions Copyright Removal Disclaimer About Editors Juan Carlos Palomino Sylvia Cardoso Leão Viviana Ritacco Contributing Authors
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Chapter 11: Biosafety and Hospital Control by Maria Alice Telles and Afranio Kritski
11.1. Biosafety in the hospital 11.1.1. Introduction Tuberculosis (TB) drug treatment can be carried out mainly at the ambulatory level, but the diagnosis of the disease is not always accomplished in the ambulatory setting. In big cities of developing countries, the diagnosis of TB is often made in the hospital before these patients are assisted at the local or regional outpatient centers. The reference treatment centers for hospitalizing TB patients are frequently the only health centers with specialized ambulatory facilities for assisting these patients, including those with co-morbidities. The percentage of patients diagnosed in hospitals may be 30 % or even higher. This kind of situation favors the exposure to TB infection in the nosocomial environment. Around 25 to 50 % of the persons exposed to an intimate contact with active pulmonary TB will become latently infected with Mycobacterium tuberculosis. Exposure to the index case for 12 or more hours implies a high risk of infection, especially in closed environments without biosafety precautions. Immunosuppressed persons have an increased risk of infection and active disease compared with immunocompetent persons. Initially, the evaluation of the risk of transmission of TB within a health institution can be classified as follows:
In the last decade, high rates of drug-resistant TB have been described in prisons and hospitals. Thus, it is essential that health facilities are adequate to assist patients with active pulmonary TB or those suspected of having TB in order to reduce the risk of M. tuberculosis transmission to healthcare personnel and other sick people, mainly immunosupressed patients. 11.1.2. Healthcare Units TB biosafety measures are often neglected. This increases the possibility of M. tuberculosis nosocomial transmission. During the '90s, transversal and longitudinal studies were accomplished on the risk of TB infection in general, as well as in reference and teaching hospitals in developed and developing countries. These studies identified a high rate of nosocomial transmission of TB to medicine, nursing, and physiotherapy students, as well as to healthcare personnel (Roth 2005, Alonso-Echanove 2001, Kruuner 2001, Harries 1997, Cuhadaroglu 2002, Do 1999, Tan 2002, Silva 2002, Resende 2004). more... (PDF) or
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11.1.3. Tuberculosis infection control activities
Assuming the political commitment of the managers of public or private hospitals and the fulfillment
of the international legislation suggested by the World Health Organization (WHO), TB transmission
control measures in a health unit can be hierarchized into three levels: administrative,
engineering, and individual protection (Jensen 2005, World Health Organization 1999, British
Thoracic Society 2000).
Initially, the administrative measures can be deemed the most important. Besides being
comprehensive, they are generally related to the permanent education and training of the healthcare
personnel aimed at the implementation and appropriate fulfillment of the established norms.
The administrative measures include the evaluation of:
Number of pulmonary TB cases assisted annually in the health unit
· Number of annual pulmonary TB cases among the healthcare personnel
· Risk profile of the unit, by sector:
- Low: < 6 pulmonary TB patients per year
- Intermediate: = 6 pulmonary TB patients per year and an annual average risk of TB infection
(tuberculin skin test conversion) lower than 2 % among healthcare personnel
- High: = 6 patients with pulmonary TB and an annual risk of TB infection among healthcare personnel
higher than 2 %
· Areas that potentially present a higher risk of transmission:
- respiratory isolation rooms
- ambulatory and phthisiology waiting rooms
- thoracic radiology room
- bronchoscopy and sputum induction rooms
- pentamidine nebulization room
- ventilatory assistance areas
- day-hospital
- emergency rooms
- autopsy room
- microbiology/mycobacteria laboratory
11.1.4. General practices
11.1.4.1. Management of hospitalized pulmonary tuberculosis patients
· The head nurse of the unit must have autonomy to isolate the patient if there is clinical
suspicion of airborne TB.
· The patient in isolation must stay under the responsibility of the service that admitted him/her.
· The patients in isolation must be instructed to cover their mouth and nose when they cough or
sneeze, even inside their room.
· The tests to be accomplished on the patients in isolation should be done as soon as possible, so
that they spend a minimum time outside their room; the patient should not wait for the tests in the
waiting rooms of the different services.
· When the patient needs to leave the room, a surgical mask must be used.
· Healthcare personnel must avoid unnecessary entry into the isolation rooms; in the same way, the
number of visitors and attendants should be restricted to the smallest number possible. In this
case, everyone should enter the isolation room using special masks (N95 or PFF2 respirators).
· In case of need, the priority in the isolation will be given to patients with acid fast bacilli
(AFB) smear-positive microscopy results (bacilliferous) and shorter time of treatment.
· The patients with airborne TB (or suspicious cases) still in the infectious period should not be
submitted to surgery unless in case of emergency.
· The hospital discharge of respiratory TB patients should be accomplished in the shortest possible
time span.
Case searching
Instruct the healthcare personnel in the screening area, emergency department, at the admission and
discharge area to suspect TB in:
· respiratory symptomatic patients (cough with expectoration for more than three weeks)
· contacts of active pulmonary TB cases for more than 12 hours
· pulmonary TB radiological suspects
· persons with predisposition to TB (immunosuppression, diabetes)
Diagnosis
· Ready request, accomplishment and release of the sputum AFB smear microscopy results in persons
with presumptive TB diagnosis
· AFB smear microscopy result in 24 hours, at most
· Optimization of the diagnostic procedures, implementation of M. tuberculosis complex
identification techniques and of anti-tuberculosis drug susceptibility testing
Every healthcare professional with signs or consistent symptoms of pulmonary TB should seek medical
help and be submitted to laboratory tests (sputum AFB smear microscopy, when clinical specimen is
available) and thoracic radiography. Until the pulmonary TB diagnosis is ruled out or the patient is
considered non-infectious, healthcare workers with pulmonary disease should stay away from their
activities. Healthcare personnel must be informed that patient care activities are not suitable for
those harboring an immunosuppressive condition, such as human immunodeficiency virus/acquired
immunodeficiency syndrome (HIV/AIDS), malign neoplastic disease or deficient cellular immunity. HIV
testing and counseling should be offered to all healthcare professionals.
Creation of a TB control committee responsible for:
· evaluating annual trends of M. tuberculosis drug resistance in the institution
· identifying transmission risk areas
· performing operational studies for the surveillance of compliance with biosafety norms
· accomplishing biosecurity educational activities for the healthcare personnel
· accomplishing periodic tuberculin skin testing in the healthcare personnel
· preventing recently infected persons from becoming ill; indicating chemoprophylaxis to the
healthcare personnel with latent TB infection.
11.1.4.2. Guidelines for patient isolation
· Suspected or confirmed airborne TB cases
· HIV-positive respiratory symptomatic patient with any change in thoracic X-ray
· HIV-negative patient with a radiological image suggestive of pulmonary TB (hypotransparency in the
superior lobes of the lung or in segment six, or with a diffuse micronodular infiltration,
suggestive of miliary disease
· Patient with a request for sputum AFB microscopy examination and/or culture
· The head nurse of the unit must have autonomy to isolate the patient if there is clinical
suspicion of respiratory TB
Respiratory isolation area
· Must be an individual room, with the door closed and windows that can be opened
· If absolutely necessary, two pulmonary TB patients can share an isolation room, provided they both
have confirmed TB diagnosis and there is no epidemiological suspicion of drug-resistant TB (such as
patients that have not received previous treatment and have not had contact with drug-resistant TB
cases).
Time for discharge from respiratory isolation
· In confirmed TB cases under a treatment scheme containing rifampicin: after two weeks of treatment
and with three sputum AFB smear-negative results or one induced sputum or bronchoalveolar lavage AFB
smear-negative result
· In confirmed TB cases under a treatment scheme not containing rifampicin: after four weeks of
treatment and with three sputum AFB smear negative results or one induced sputum or bronchoalveolar
lavage AFB smear-negative result
· If one of the tests is positive, repeat the series after one week
· In suspicious cases: with three negative sputum-smear microscopy or one induced sputum or
bronchoalveolar lavage with negative AFB smear microscopy
11.1.4.3. Ambulatory assistance under a standardized Reference Health System
· Signal the TB risk areas of the unit
· Avoid movements of confirmed or suspected TB patients inside the health unit in order to minimize
contact with people awaiting assistance for other ambulatory specialties in waiting or examination
rooms
· In outpatient units where ambulatory patients with pulmonary TB and conditions other than TB are
assisted in the same places and/or by the same healthcare personnel, consultation appointments
should be separated in different hours or days, in such a way to avoid TB exposure of uninfected
persons, mainly those who are immunosuppressed
· Avoid crowding in the waiting rooms, assigning consultations to specific days for TB and setting a
time for consultation, giving priority to the assistance of infectious patients and suspicious
cases, thus avoiding the gathering of potentially infectious patients
· Avoid assisting immunosuppressed patients and children less than 5 years old in rooms contiguous
to the ones assisting TB patients
· Offer surgical masks or tissue paper to infectious or suspected TB patients, mainly when
circulating through the unit (specialist consultation, X-ray exams, sputum delivery to the
laboratory, search for exam results, etc.)
· Instruct patients to cover their mouth and nose when they cough or sneeze.
11.1.4.4. Engineering measures
Engineering measures for TB control are architectural and technical devices aimed at the adaptation
of the unit, or of a certain area, to provide care to pulmonary TB patients. The implementation of
such measures contributes to decreasing the risk of TB transmission and should be directed by
qualified personnel with special knowledge on the characteristics of TB transmission.
Objectives
Basically, the objective is the removal or dilution of infectious particles taking into account the
following factors:
· Ventilation exhaustion: captures and removes contaminants suspended in the air near the source
(patient)
· General ventilation: ventilation rate or number of air changes per hour; for example, a complete
air exchange per hour of a certain area reduces the concentration of infectious particles by 63 %,
while six complete exchanges are needed to reduce it by 99 %
· Direction of the air flow within the facilities: contains the contaminated air in a certain area
of the facility and prevents spread into non-contaminated areas
· Negative pressure in the room with directional flow: contains the contaminated air in a certain
area of the room and prevents spread to non-contaminated areas
· Adjustment of air flow pattern inside the room: prevents air stagnation short circuit
· Air filters and/or ultraviolet (UV) light: disinfect air
High efficiency particulate air (HEPA) filters
HEPA filters or absolute filters are those able to remove 99.97 % of particles with a diameter
larger than 0.3 µm which pass through them. They can be placed in exhaustion ducts, in room ceilings
or in movable filtration units.
The use of HEPA filters and/or UV light is strongly recommended for rooms where the following
procedures take place: bronchoscopy, induced sputum, pentamidine nebulization, necropsy, and
isolation. The combination of an adequate number of air changes with negative pressure and a HEPA
filter or UV light minimizes the risk of transmission in the environment in which the TB patient is
assisted and in the area where the air is exhausted. The germicidal efficiency of the UV light is
limited to its area of direct incidence and decreases with time.
HEPA filters are used:
· To purify the exhaustion of air of contaminated environments
· To recirculate the air inside the room or to other rooms facilitating the number of air changes
per hour.
Basic engineering recommendations
In areas with a high risk of infection, the main engineering measure is to facilitate ventilation so
that the particles suspended in the air are removed at the highest speed possible. The speed of air
removal is calculated in air changes per hour and should be:
· six air changes per hour for the isolation, the ambulatory, the X-ray, the waiting and the
emergency rooms, and the ventilatory assistance areas
· twelve air changes per hour for the bronchoscopy, the sputum induction, the pentamidine
nebulization and the autopsy rooms and the mycobacteria laboratory
The use of negative pressure
Negative pressure prevents the dispersion of contaminated air into areas where people walk, mainly
those in common use such as corridors. The exhaust air should never be directed towards these
transit areas. If safe air exhaustion is not possible, the exhausted air should be filtered or
sterilized.
Respiratory isolation room
The isolation room must:
· Be private and with suitable ventilation characteristics
· Be under negative pressure
· Be submitted to six or more air changes per hour
· Have air exhaustion to the open-air
· Have HEPA filters if the air is recirculated or exhausted to circulation areas
· Have anterooms (they increase isolation effectiveness, minimizing the escape risk)
· Have UV light (optional)
· Be submitted to six air changes between a patient's discharge and the following patient's
admission
Outpatient clinic
In areas dedicated to ambulatory care, the minimum biosecurity conditions should include:
· Adequate (ventilated and sunny) site for sputum collection, preferentially outdoors
· Air flow adaptation of the waiting and consultation rooms, avoiding the use of ceiling fans; air
conditioning is allowed only in combination with HEPA filters
· Suitable area for the waiting room, preferably outdoors, far away from any crowded area or other
waiting rooms
· Within the assistance room, use of a standing fan either to direct the air flow towards the window
(or door) or to produce an air "barrier" between the doctor and the patient
· The use of standing fans and exhaust fans in strategic points is a low-cost alternative to
increase the number of air changes per hour
· Adaptation to the environment to which the air is being directed, avoiding other people being
exposed to the risk of infection
11.1.4.5. Individual Protection
Measures for healthcare personnel at risk
· Masks: they can be of the N-95 type, with a National Institute for Occupational Safety and Health
(NIOSH) certification of the United States (US) or of the PFF-2 type, with international standards
certification; common surgical masks are not advisable: their effectiveness in preventing the
inhalation of particles with diameters of 1 to 5 µm is less than 50 % (they were specifically
designed to prevent the exhalation of particles)
· The protection masks should be supplied by the health service where the TB patients are assisted,
preferably in various sizes and models
· Even if administrative and environmental control measures are in force, healthcare workers should
wear appropriate respiratory protection devices (N95 or PFF2) at all times while they are in
patients' rooms, during bronchoscopy, induced sputum, pentamidine nebulization, surgery or autopsy
performed on suspected or confirmed TB cases
· Instruct the personnel on the correct use of the special masks, reminding male employees that they
should have their faces shaved as beards and/or mustaches can prevent perfect adjustment of the mask
to the face
· Special masks (N95 or PFF2 respirators) can be used for indeterminate periods of time, as long as
they are kept dry, clean and intact (without any torn, frayed or crumpled areas); their storage in
plastic bags after use must be avoided because bags retain humidity
For TB patients transiting through the institution
· Indicate the use of common surgical masks for the respiratory symptomatic patients as soon as they
enter the unit (triage, emergency, ambulatory, when being admitted or when passing through). The
surgical masks work as a barrier, capturing the damp particles (usually larger than 5 µm) and,
therefore, do not work as filters.
· In the day-hospital sector, HIV-negative patients who have been coughing for more than three weeks
should wear a common mask all the time whilst there; HIV/AIDS patients with any respiratory symptom
should use a common mask all the time. When the engineering measures are not working in the room,
the asymptomatic patient in the same setting should be instructed to use a special mask (N95 or
PFF2), particularly if immunosuppressed.
11.1.5. Tuberculin skin test survey
The evaluation of the risk of infection from M. tuberculosis (through tuberculin investigation)
should be performed on healthcare personnel in the following situations:
· Recently admitted personnel
· Personnel that report frequent contact with pulmonary TB patient
It is important that every health unit knows the prevalence of TB infection and TB disease among the
healthcare personnel. In this sense, the healthcare worker that reports a past history of active TB
or household contact with a pulmonary TB case in the last two years must be submitted to medical
examination, tuberculin testing and a chest X-ray.
A tuberculin skin test (TST) should be applied and read by one of a limited-number of trained nurses
tested for intra- and inter-reader variability. Tuberculin purified protein derivative (PPD) will be
injected subcutaneously and the amount of induration should be measured at 48-72 hours. For
healthcare workers with an induration < 10 mm, the tuberculin skin test should be repeated 7-10 days
later. Those with a two-step tuberculin skin test < 10 mm should be asked to undergo a repeated
tuberculin skin test 6-12 months later. Those with a tuberculin skin test = 10 mm and those who
experienced a tuberculin skin test conversion should undergo a medical evaluation to rule out TB
disease.
Since 1995, bacille Calmette-Guérin (BCG) revaccination has not been recommended by the WHO. Few
countries still maintain the use of BCG revaccination. Recently, in an open, randomized clinical
trial performed in Brazilian children, it was found that a second BCG vaccination at school age has
low effectiveness. Because of these results and those described in the international literature, BCG
vaccination is no longer recommended for healthcare personnel in some countries, including Brazil
(Rodrigues 2005).
According to a study performed in the US, tuberculin investigation every 12 months in areas with a
high risk of TB infection would be more cost-effective than other measures for preventing TB.
Chemoprophylaxis should be indicated to recent PPD converters (induration increase of 10 mm in
relation to the last test) (Nettleman 1997).
11.1.6. Recommendations
Flaws related to biosecurity measures (administrative, environmental or of individual protection)
are factors known to be associated with higher nosocomial TB transmission.
The primary tuberculous infection may manifest itself as a light respiratory condition with hardly
any clinical or radiological signs. Consequently, it usually remains undiagnosed. During this
process, M. tuberculosis spreads both lymphatically and hematogenously and the bacilli implanted in
extrapulmonary organs or tissues are a potential source of subsequent reactivation. Generally, the
tuberculin skin test is the sole indication that M. tuberculosis infection has occurred.
It is estimated that 10 % of individuals infected with M. tuberculosis will develop active TB at
some time during their lifetime. The risk of becoming sick with TB is highest in the first two years
after the infection, when about 5 % of infected individuals undergo a progression from latent to
active disease. The other 5 % can develop active TB at any time in their lifetime if they do not
receive the treatment recommended for latent infection.
Even in places where TB is endemic and BCG vaccination is universal, the result of the tuberculin
skin test reflects, with reasonable accuracy, exposure to M. tuberculosis. In countries with a high
prevalence of TB, in which 25 to 50 % of the population is considered to be infected by M.
tuberculosis, the tuberculin skin test is highly specific and a positive result has a high
probability of indicating tuberculous infection. The adequate establishment and fulfillment of TB
biosafety measures are the tools needed to reach the goal of reducing the annual risk of infection
in healthcare personnel to levels similar to those of the general population.
11.2. Biosafety in the laboratory
11.2.1. Introduction
Microbiology laboratories are unique and special work environments, where the handling of infectious
organisms may pose risks of infection to the laboratory personnel or the surrounding community.
Several cases of infections acquired in the laboratory have been reported throughout the history of
microbiology. By the end of the 19th century and the beginning of the 20th, reports had already been
published describing laboratory-associated cases of typhoid, cholera, brucellosis, and tetanus. By
the middle of the 20th century, a few publications reported cases of laboratory-related infections
in the United States. Some of these cases were attributed to carelessness or inappropriate
techniques in the handling of infectious material (Meyer 1941, Sulkin 1949, Sulkin 1951).
A laboratory survey was updated in 1976 (Pike 1976) totaling 3,921 cases. Brucellosis, typhoid,
tularemia, TB, hepatitis and Venezuelan equine encephalitis accounted for most of the infections.
Not more than 20 % of these cases were associated with a documented accident. Exposure to infectious
aerosols was considered to be a likely but unconfirmed source of infection in more than 80 % of the
reported cases, in which the infected person had "worked with the agent". Pike, in 1979, concluded
that "the knowledge, the techniques and the equipment to prevent most laboratory infection were
available" (Pike 1979).
The actual risk of a laboratory-acquired infection is difficult to measure because there is no
systematic reporting system. Besides, surveillance data on laboratory-associated infections are
difficult to collect because the infections are often subclinical and have an atypical incubation
period and route of infection. Another problem is that laboratory directors may not report incidents
for fear of reprisal or embarrassment (Sewell 1995).
The risk of exposure to infectious agents tends to be lower for laboratory workers than other groups
of healthcare workers. However, the risk of laboratory-associated infection in employees of clinical
and research laboratories is greater than that of the general population, suggesting that unique
risks are associated with the laboratory work environment (Kiley 1992).
The advent of the HIV/AIDS epidemic in the early '80s and the fact that the rate of new cases of TB
began to rise in 1986 in developed countries (Tenover 1993), put laboratory safety and safety
programs in the spotlight. The safety concerns led to the elaboration of guidelines and manuals
(Centers for Disease Control 1987, Occupational Safety and Health Administration 1991). A decrease
in the occupational risks associated with working in a clinic or laboratory was observed after these
guidelines were adopted (Fahey 1991, Wong 1991).
The term "containment" is used when describing safe methods for managing infectious material in the
laboratory environment where they are handled or stored. The purpose of containment is to reduce or
eliminate exposure of laboratory workers, other people, and the outside environment to potentially
hazardous agents.
Primary containment: protection of laboratory workers and the immediate laboratory environment from
exposure to infectious agents is provided by both good microbiological technique and the use of
appropriate safety equipment. The use of vaccines may provide an increase in the level of personal
protection.
Secondary containment: protection of the environment outside the laboratory from exposure to
infectious materials is provided by a combination of facility design and operational practices.
Therefore, the three elements of containment include laboratory practice and technique, safety
equipment, and facility design. The risk assessment of the work to be done with a specific agent
will determine the appropriate combination of these elements (Blumberg 2000, Blumberg 2004, Centers
for Disease Control and Prevention 1994, Centers for Disease Control and Prevention 2005).
The most important element of containment is the strict adherence to standard microbiological
practices and techniques. People who work with infectious agents or potentially infected materials
must be aware of potential hazards and must be trained and proficient in the practices required for
the safe handling of these materials. The director of the laboratory is also responsible for
providing or arranging the appropriate training of personnel.
Each laboratory should develop or adopt a biosafety manual or operations manual that identifies the
hazards that are or may be found in the laboratory, and that specifies practices and specific
procedures designed to minimize or eliminate the exposure to such hazards. Personnel should be
informed about the special hazards and should follow the necessary practices and procedures.
A scientist trained and knowledgeable in appropriate laboratory techniques, safety procedures and
hazards associated with the handling of infectious agents must be responsible for the conduct of
work with any infectious agent or infected material.
M. tuberculosis is repeatedly ranked within the top-five most common laboratory-acquired infections
(Collins 1998, Miller 1987, Sepkowitz 1994, Seidler 2005). Pike reported that laboratory and
mortuary workers exposed to tubercle material have a TB incidence rate three times higher than that
of the general population and indicated that only 18 % of infections could be traced back to a known
event (Pike 1976). Despite the current knowledge and biosafety measures in place, a recent report in
New York demonstrated rates from 2 to 6.6 % of TB conversion among healthcare workers (Garber 2003).
In addition, surveys suggest that the actual incidence of laboratory-acquired infections due to M.
tuberculosis is greater than the number of reported cases. The documentation of a case of
laboratory-acquired TB is difficult because the source of the infection is often unclear, as a
result of the potential for exposure outside of the workplace and the long incubation period before
the development of symptomatic disease (Collins 1993, Pike 1979). The incidence of TB in laboratory
personnel is estimated to be three to nine times that of individuals in other job environments
(Harrington 1976, Reid 1957, Saint-Paul 1972).
Manipulation of specimens or cultures that generate aerosols is the most important risk factor for
acquiring TB in the laboratory. Aerosolization occurs frequently during autopsies, preparation of
frozen sections of infected tissues, and procedures involving liquid cultures (Centers for Disease
Control and Prevention 1981, US Department of Health and Human Services 1993).
M. tuberculosis presents a low infective dose for humans of less than 10 bacilli (Riley 1957, Riley
1961), suggesting a high risk for laboratory-acquired infection.
Due to the nature of this organism, containment level 3 (CL3) laboratory operational and physical
requirements have been recommended for manipulation of the live organism in North America (US
Department of Health and Human Services 1995). Therefore, one would hypothesize that working in a
CL3 with personal protective equipment, including a respirator, would be adequate to protect the
worker. However, as tuberculin skin test conversion is still occurring (Blackwood, 2005), other
practices and causes should be analyzed.
These recommended measures are implemented by healthcare facilities in high-income countries, but
given their high cost, few facilities in low-income countries can afford to implement them (Pai
2006).
The WHO has proposed practical and low-cost interventions to reduce nosocomial transmissions in
settings where resources are limited, and these are available on the internet at
http://www.who.int/docstore/gtb/publications/healthcare/index.htm (World Health Organization 1999).
Several simple interventions can ameliorate working conditions, such as training and supervising
laboratory workers in good techniques and biosafety practices to provide the necessary organization
(DeRiemer 2000, Joshi 2006).
11.2.2. Laboratory biosafety levels
Infectious microorganisms are classified by risk group. This type of classification is to be used
for laboratory work purposes only.
· Risk Group 1 (no or low individual and community risk)
A microorganism that is unlikely to cause human or animal disease.
· Risk Group 2 (moderate individual risk, low community risk)
A pathogen that can cause human or animal disease, but is unlikely to be a serious hazard to
laboratory workers, the community, livestock or the environment. Laboratory exposure may cause
serious infection, but effective treatment and preventive measures are available and the risk of
spread of infection is limited.
· Risk Group 3 (high individual risk, low community risk)
A pathogen that usually causes serious human or animal disease but does not ordinarily spread from
one infected individual to another. Effective treatment and preventive measures are available.
· Risk Group 4 (high individual and community risk)
A pathogen that usually causes serious human or animal disease and that can be readily transmitted
from one individual to another, directly or indirectly. Effective treatment and preventive measures
are not usually available.
Biosafety Level designations: are based on a combination of the design features, construction,
containment facilities, equipment, practices and operational procedures required for working with
agents belonging to the various risk groups (World Health Organization 2004).
Laboratory facilities are designated as:
· Biosafety Level 1 - basic laboratory
· Biosafety Level 2 - basic laboratory
· Biosafety Level 3 - laboratory with containment conditions
· Biosafety Level 4 - laboratory with maximum containment
A national classification of microorganisms, by risk group, may be determined taking into account
regional characteristics:
· Organism: pathogenicity, mode of transmission
· Host: immunity, density vectors, environment
· Preventive measures
· Treatment
11.2.3. Risk assessment
Any laboratory work should be done under appropriate biosafety conditions based on risk assessment.
Such an assessment will take into considerations the agent risk group as well as other factors to
establish the biosafety level (World Health Organization 2004).
Organism
Factors that should be considered concerning the organism include:
· Pathogenicity of the agent and infectious dose
· Potential outcome of exposure
· Natural route of infection
· Other routes of infection, resulting from laboratory manipulations (parenteral, airborne,
ingestion)
· Stability of the agent in the environment
· Concentration of the agent to be manipulated
· Presence of a suitable host (human or animal)
· Information available from animal studies and reports of laboratory-acquired infections or
clinical reports
· Laboratory activity planned (sonication, aerosolization, centrifugation, etc.)
· Any genetic manipulation of the organism that may extend the host range of the agent or alter the
agent's sensitivity to known, effective treatment regimens
· Local availability of effective prophylaxis or therapeutic interventions
On the basis of the information ascertained during the risk assessment, a biosafety level can be
assigned to the planned work:
· appropriate personal protective equipment
· standard operating procedures (SOPs)
· other safety interventions developed to ensure the safest possible conduct of the work
11.2.4. General laboratory practices
There are different types of laboratory hazards, such as biological, chemical, radiation and
physical, as well as electrical hazards, slips, trips, and falls.
Attitude, behavior and common sense are the key to prevent such accidents.
The main causes of laboratory accidents are: lack of training, knowledge or experience; excessive
self-confidence, negligence, fatigue, taking shortcuts, work load, working too fast, deciding not to
follow safe practices, and skepticism about biohazard.
Laboratory workers can be classified as "unsafe" and "safe". Unsafe workers are those who have a low
opinion of safety programs, take excessive risks, work too fast and are less aware of the risk of
agents. Safe workers are those who adhere to safety guidelines, practice defensive work habits and
recognize potentially hazardous situations (Phillips 1986, Harding 1995).
The laboratory has to be organized with responsibility levels. The manager needs to have an attitude
of support towards the safety program, should provide adequate resources and training, should supply
a safe work environment, monitor work practices, and assess and assign risk level for hazardous
materials (biologicals, chemicals, animals).
The employees, on the other hand, have to comply with occupational safety and health standards,
rules, regulations and orders, use personal protective equipment and safety equipment when needed,
and report all work-related accidents and illness to the supervisor.
The types of regulations that support working safely in laboratories are government regulations,
institutional regulations, and laboratory regulations or guidelines.
General safety guidelines
· Eating, drinking or smoking are not permitted in laboratories or offices
· Wear personal protective equipment when needed
· Practice good personal hygiene
· Children are not allowed into laboratory areas
· Good housekeeping
- clean up after each manipulation
- do not store materials on work surfaces
- keep aisles clear
- keep chemicals in storage cabinets
- purge work areas of unnecessary or unused equipment, supplies or chemicals
· Minimize all exposure
· Never underestimate the risks
· Become familiar with:
- emergency exits
- emergency procedures
- first-aid
- fire responses
· Report all accidents and injuries
· Ask questions when in doubt
Personal safety guidelines
Take pride in your workplace and practice accident prevention by banning negative attitudes and bad
habits such as:
· Overconfidence
· Showing off
· Stubbornness
· Laziness
· Carelessness
· Impatience
· Ignorance
Safety guidelines - slips, trips and falls
· Clean up spills
· Watch out for loose carpet, polished floors, or objects on floor
· Keep all chair legs on the floor
· Use step stools and ladders when reaching for top shelves
· Never lay cords across walkways
· Use as much light as possible
· Do not carry loads which block your vision
Safety guidelines - storage
· Avoid overloading file cabinets
· Close file cabinet drawers when finished
· Store heavy items on lower shelves
· Keep pointed and sharp objects in a box in your desk drawer
Safety guidelines - personal protective equipments
Appropriate personal protective equipment must be worn whenever working with hazardous materials.
· Lab coat
- must be worn in the laboratory
- should be buttoned at all times
- should cover the arms, torso, back and legs above the knees
- should be selected based upon the chemicals used
- should be removed and replaced if soiled or contaminated
- should not be worn outside of the laboratory
· Eye and face protection
- eye glasses, face shield, or mask are worn for work with small quantities (< 1 L)
- goggles are worn for work with large volumes (1-5 L)
- chemical fume hood or other shield should be used for volumes > 5 L
- should not be worn outside laboratory
· Gloves
- should be selected based on the chemicals being used
- should be inspected for tears or holes before use
- should be replaced or discarded when dirty or contaminated
- should not be removed from the laboratory
· Respiratory protection
- must be worn in the laboratory where there is an inhalation hazard
- should not be worn if not trained in their use
- should be cleaned and inspected after each use and allowed to dry completely
- should be selected based upon the chemicals used or agents handled
- should not be taken out of the laboratory
Safety guidelines - controlling aerosols
· Avoid splattering and spilling solutions
· Use plastic-backed absorbent paper on work surfaces
· Place caps or tops on bottles and tubes
· Place balances in ventilated enclosures
· Use safety cups when centrifuging
· Work under containment
- biological safety cabinet
- chemical fume hood
- ventilated enclosures
- directional airflow
Risk assessment
· Identify all hazardous materials and processes
· Consider possible routes of entry
· Consult information resources
· Evaluate biosafety level or toxicity of material
· Evaluate quantitative information on toxicity
· Select procedures to minimize exposure
· Prepare for contingencies
Safety guidelines - Laboratory security
· Prevent unauthorized entry into laboratory areas
· Prevent unauthorized removal of hazardous materials
· Recognize that laboratory safety and security are different
· Control access
· Know who is in the laboratory
· Know what materials are being brought into the laboratory
· Know what materials are being removed from the laboratory
· Have an emergency plan
· Have a protocol for reporting incidents
11.2.5. Decontamination
Mycobacteria are generally more resistant to chemical disinfection than other vegetative bacteria
(Russel 1986).
The subject of disinfectants, which are really effective against mycobacteria, is very controversial
and can generate confusion.
Table 11-1 shows disinfectants active against mycobacteria. The most common disinfectants used in
the mycobacteria laboratory are: phenol 5 %, ethanol 70 % and sodium hypochlorite 2%.
There are interesting studies showing the efficacy of disinfectants against mycobacteria and M.
tuberculosis (Best 1988, Best 1990).
The WHO manual of laboratory biosafety also gives good information on disinfectants in general
(http://www.who.int/csr/resources/publications/biosafety/WHO_CDS_CSR_LYO_2004_11/en/index.html).
Table 11-1: Disinfectants active against Mycobacteria
Disinfectant Final concentration
Phenol 5 %
Sodium hypochlorite 10,000 ppm of Av Cl/mL
Sodium dichloroisocyanurate 6,000 ppm of Av Cl/mL
Ethanol 70 %
Glutaraldehyde-phenate 2 %
Av Cl = available chlorine
11.2.6. Handling of biological waste
It is strongly recommended that residues be segregated, packaged and properly labeled at the point
of origin. They should then be immediately placed in distinctive containers according to their
species and group, in order to reduce the amount of contaminated residues, as well as accidental
risks, and to adopt the best conduction for the treatment of infectious or contaminant residues
(Coelho 2000).
Potentially infectious: should be disposed of in plastic bags, made of polypropylene, resistant to
autoclaving.
Bags should be filled up to 2/3 of their capacity and totally closed to prevent leaking of the
content, even if turned upside down. Bags cannot be emptied or reused. In the laboratory, bags
should be stored in garbage containers made of material that permits chemical or physical
decontamination, identified with the label of hazardous biological waste having
hinged-foot-activated mechanisms for opening and closing the lid, with rounded corners and edges.
Every biological residue generated in the laboratory should be previously treated before being
disposed, even in the case of selective collection such as hospital or animal-house facility waste.
Sharp and cutting residues: should be disposed of in containers with rigid walls and lids resistant
to sterilization.
The collecting containers for sharp and cutting material should be placed as near as possible to the
area of use of such material. The containers should not be filled above 2/3 of their capacity.
After being filled, the collecting container should be closed and placed in plastic bags resistant
to autoclaving. Such containers should be identified with self-adhesive labels, with the following
information: "Do not reuse empty container".
Decontamination: autoclaving sterilization is the safest method, for its penetration power is higher
than dry heat. Microorganisms are destroyed by thermocoagulation of cytoplasmic proteins.
Before disposal, bags should be sterilized by autoclaving; sterilization occurs at a pressure of 1
atm at temperatures of up to 121°C (250°F) for 62 minutes, with a 7-minute interval pre-vacuum, 25
minutes heating, 25 minutes sterilization for surface material or 30 minutes sterilization for thick
materials and 15 minutes of cooling.
If final disposal occurs after a 24-hour period, anatomical pieces, human and animal organs and
carcasses that have undergone treatment, should be refrigerated or kept in formalin.
Leaking of biological residues: in case of disruption or leaking of bags containing biological
residues that have not undergone prior treatment, the procedures below should be followed:
· Cover the spill and spill site with paper towels
· Pour disinfectant solution (for example sodium hypochlorite: a minimum of 10,000 ppm available
chloride) on the paper towels for 30 minutes contact time
· Pick up paper towels and discard them into a plastic bag
· Reapply disinfectant and wait for 10 minutes
· Carry out the cleaning
· Decontaminate all materials that had direct contact with the spill
· The professional responsible for the cleaning of the spill must wear the necessary Individual
Protection Equipment
Guidelines for internal collection and transport of residues
· Never pour the contents of the garbage bin into another container. The garbage bag should be
picked up, closed, and placed inside the internal waste collection trolley
· Check if there is any leakage in the plastic bag prior to picking it up from the garbage bin. In
case of leakage, the bag should be placed into another bag with the same specification and the
garbage bin must be washed and disinfected
· Residue transport from the laboratory to the disposal room can be done by hand or by the internal
waste collection trolley
11.2.7. Transport of infectious materials
Guidance on regulations for the transport of infectious substances can be found at:
http://www.who.int/csr/resources/publications/biosafety/WHO_CDS_EPR_2007_2/en/index.html
11.2.8. Good Laboratory Practices (GLP)
Laboratories are complex and dynamic environments. Biomedical research and clinical laboratories
must be able to adapt quickly to continuously increasing public health needs and pressures.
All biological research and clinical laboratories should be regularly certified to ensure that:
· Proper engineering controls are being used and are functioning adequately as designed
· Personal protective equipment is appropriate for the tasks being performed
· Decontamination of waste and materials has been adequately considered and proper waste management
procedures are in place
· Proper procedures for general laboratory safety, including physical, electrical and chemical
safety are in place
Laboratory certification is the systematic examination of all safety features and processes within
the laboratory (engineering controls, personal protective equipment and administrative controls).
Biosafety practices and procedures are also taken into account. Laboratory certification is an
on-going quality and safety assurance activity that should take place on a regular basis.
Standardized practices can be found in the WHO Laboratory Biosafety Manual
(http://www.who.int/csr/resources/publications/biosafety/WHO_CDS_CSR_LYO_2004_11/en/index.html).
Some important topics are summarized below:
Safe handling of specimens in the laboratory
Improper collection, transport and handling of specimens in the laboratory carry a risk of infection
to the personnel involved.
Specimen containers
Specimen containers may be of glass or preferably plastic. They should be robust and should not leak
when the cap or stopper is correctly applied. No material should remain on the outside of the
container. Containers should be correctly labeled to facilitate identification. Specimen request or
specification forms should not be wrapped around the containers but placed in separate, preferably
waterproof envelopes.
Transport of specimens within the facility
To avoid accidental leakage or spillage, secondary containers, such as boxes, should be used, fitted
with racks so that the specimen containers remain upright. The secondary containers may be of metal
or plastic, should be autoclavable or resistant to the action of chemical disinfectants, and the
seal should preferably have a gasket. They should be regularly decontaminated.
Receipt of specimens
Laboratories that receive large numbers of specimens should designate a particular room or area for
this purpose.
Opening packages
Personnel who receive and unpack specimens should be aware of the potential health hazards involved,
and should be trained to adopt standard precautions, particularly when dealing with broken or
leaking containers. Primary specimen containers should be opened in a biological safety cabinet.
Disinfectants should be available.
Use of pipettes and pipetting aids
Mouth pipetting must be strictly forbidden. A pipetting aid must always be used for pipetting
procedures. The most common hazards associated with pipetting procedures are the result of mouth
suction. Oral aspiration and ingestion of hazardous materials have been responsible for many
laboratory-associated infections.
Pathogens can also be transferred to the mouth if a contaminated finger is placed on the suction end
of a pipette. A lesser known hazard of mouth pipetting is the inhalation of aerosols caused by
suction. The use of pipetting aids prevents ingestion of pathogens.
Aerosols are generated when a liquid is dropped from a pipette on to a work surface, when cultures
are mixed by alternate sucking and blowing, and when the last drop is blown out of a pipette. The
inhalation of aerosols unavoidably generated during pipetting operations can be prevented by working
in a biological safety cabinet.
· All pipettes should have cotton plugs to reduce contamination of pipetting devices
· Air should never be blown through a liquid containing infectious agents
· Infectious materials should not be mixed by alternate suction and expulsion through a pipette
· Liquids should not be forcibly expelled from pipettes
· Mark-to-mark pipettes are preferable to other types, as they do not require expulsion of the last
drop
· A discard container for pipettes should be placed within the biological safety cabinet, not
outside it
· Syringes fitted with hypodermic needles must not be used for pipetting
· Devices should be used to open septum-capped bottles and to allow the introduction of pipettes,
thus avoiding the use of hypodermic needles and syringes
· To avoid dispersion of infectious material dropped from a pipette, an absorbent material should be
placed on the working surface; this should be disposed of as infectious waste after use
Avoiding the dispersal of infectious materials
Disposable transfer loops do not need to be resterilized and can, therefore, be used in biological
safety cabinets. These loops should be placed in disinfectant after use and discarded as
contaminated waste.
Discarded specimens and cultures for autoclaving should be placed in leak-proof containers, e.g.
laboratory discard bags. Tops should be secured (e.g. with autoclave tape) prior to disposal into
waste containers.
Working areas must be decontaminated with a suitable disinfectant at the end of each work period.
Special care should be taken when drying sputum samples, to avoid creating aerosols. Smears should
be dried at room temperature inside the biological safety cabinet, or outside the biological safety
cabinet on a temperature plate.
Use of biological safety cabinets
· The use and limitations of biological safety cabinets should be explained to all potential users,
with reference to national standards and relevant literature. Written protocols or operation manuals
should be provided to staff. In particular, it must be made clear that the cabinet will not protect
the operator from spillage, breakage or poor technique
· The cabinet must not be used unless it is working properly
· The glass viewing panel must not be opened when the cabinet is in use
· Apparatus and materials in the cabinet must be kept to a minimum. Air circulation at the rear
plenum must not be blocked
· Bunsen burners must not be used in the cabinet as the heat produced will distort the airflow and
may damage the filters
· All work must be carried out in the middle or rear part of the work surface and be visible through
the viewing panel
· Traffic behind the operator should be avoided
· The operator should not disturb the airflow by repeated removal and reintroduction of arms
· Air grills must not be blocked with notes, pipettes or other materials, as this will disrupt the
airflow, causing potential contamination of the material and exposure of the operator
· The surface of the biological safety cabinet should be wiped using an appropriate disinfectant
after work is completed and at the end of the day
· The UV-light should be switched on for 15 minutes before switching off the cabinet
· Paperwork should never be placed inside biological safety cabinets
The UV-light is very effective against mycobacteria when used for surface decontamination. For this
reason we recommend its use in the cabinet to prevent cross-contamination of cultures (Ueki in
press). In figure 11-1 the effect of UV light on a plate on which mycobacteria were inoculated is
shown.
Figure 11-1: A) Two species of mycobacteria inoculated on Middlebrook 7H11 plates. The plates were
then covered with aluminum foil and exposed to UV light inside the cabinet during 5 and 10 minutes.
B) The same experiment, but only half of the plates were covered and the other half was exposed
directly to the UV light.
Avoiding ingestion of infectious materials and contact with skin and eyes
· Large particles and droplets (> 5 µm in diameter) released during microbiological manipulations
settle rapidly on bench surfaces and on the hands of the operator. For this reason, laboratory
workers should wear disposable gloves and avoid touching their mouth, eyes or facial skin
· No materials should be placed in the mouth - pens, pencils, chewing gum - when in the laboratory
· Cosmetics should not be applied in the laboratory
· The face should be shielded or otherwise protected during any operation that may result in the
splashing of potentially infectious materials
Avoiding injection of infectious materials
· Accidental inoculation resulting from injury with broken or chipped glassware can be avoided
through careful practice and procedures; glassware should be replaced with plastic ware whenever
possible, e.g. plastic Pasteur pipettes and tubes should replace those made of glass
· Needle-stick injuries can be reduced by: (a) minimizing the use of syringes and needles (e.g.
simple devices are available for opening septum-stoppered bottles so that pipettes can be used
instead of syringes and needles; or (b) using engineered sharp safety devices when syringes and
needles are necessary
· Needles should never be recapped. Disposable articles should be discarded into puncture-proof
containers fitted with covers
Use of centrifuges
· Satisfactory mechanical performance is a prerequisite of microbiological safety in the use of
laboratory centrifuges
· Centrifuges should be operated according to the manufacturer's instructions
· Centrifuges should be placed at such a level that workers can see into the bowl to place trunnions
and buckets correctly
· Centrifuge tubes and specimen containers for use in the centrifuge should be made of thick-walled
glass or preferably of plastic and should be inspected for defects before use
· Tubes and specimen containers should always be securely capped (screw-capped if possible) for
centrifugation
· The buckets must be loaded, equilibrated, sealed and opened in a biological safety cabinet
· When using angle-head centrifuge rotors, care must be taken to ensure that the tube is not
overloaded as it might leak
· Use of homogenizers, shakers, blenders and sonicators
· Homogenizers used for Risk Group 3 microorganisms should always be loaded and re-opened in
biological safety cabinets
· Sonicators may release aerosols. They should be operated in biological safety cabinets or covered
with shields during use. The shields and the outside of sonicators should be decontaminated after
each use
· Domestic (kitchen) homogenizers should not be used in laboratories as they may leak or release
aerosols: laboratory blenders and stomachers are safer
· Caps and cups or bottles should be in good condition and free from flaws or distortion; caps
should be well-fitting and gaskets should be in good condition
· Pressure builds up in the vessel during the operation of homogenizers, shakers and sonicators, as
aerosols containing infectious materials may escape from between the cap and the vessel; plastic, in
particular, polytetrafluoroethylene (PTFE) vessels are recommended because glass may break,
releasing infectious material and possibly wounding the operator
· When in use, homogenizers, shakers and sonicators should be covered by a strong transparent
plastic casing that should be disinfected after use; where possible, these machines should be
operated under their plastic covers, in a biological safety cabinet
· At the end of the operation, the containers should be opened in a biological safety cabinet
· Hearing protection should be provided for people using sonicators
Use of tissue grinders
· Glass grinders should be held in absorbent material in a gloved hand; plastic (PTFE) grinders are
safer
· Tissue grinders should be operated and opened in a biological safety cabinet
Care and use of refrigerators and freezers
· Refrigerators, deep-freezers and solid carbon dioxide (dry-ice) chests should be defrosted and
cleaned periodically, and any ampoules, tubes, etc., that have broken during storage should be
removed. Face protection and heavy-duty rubber gloves should be worn during cleaning; after
cleaning, the inner surfaces of the cabinet should be disinfected
· All containers stored in refrigerators, etc., should be clearly labeled with the scientific name
of the contents, the date stored and the name of the individual who stored them; unlabelled and
obsolete materials should be autoclaved and discarded
· An inventory must be maintained of the freezer's contents
· Flammable solutions must not be stored in a refrigerator unless it is explosion proof; notices to
this effect should be placed on refrigerator doors
Films and smears for microscopy
Fixing and staining of blood, sputum and fecal samples for microscopy do not necessarily kill all
organisms or viruses on the smears. These items should be handled with forceps, stored
appropriately, and autoclaved before disposal. References about sputum smear microscopy and safe
handling of cultures can be found in the literature (Giacomelli 2005, Chedore 2002, Schwebach 2001).
Decontamination
Hypochlorite and high-level disinfectants are recommended for decontamination. Freshly prepared
hypochlorite solutions should contain available chlorine at 1 g/L for general use and 5 g/L for
blood spillages. Glutaraldehyde may be used for decontaminating surfaces. More specific information
on mycobactericidal agents can be found in Best 1988, Best 1990, and Rutala 1991.
DNA extraction
DNA extraction is better accomplished by heating for 10 minutes at 100oC. This procedure inactivates
the bacilli (Zwadyk Jr 1994, Bemer-Melchior 1999).
For genotyping purposes, DNA extraction should be less drastic to avoid damaging the DNA. Heating
for 20 minutes at 80oC is recommended in this case. There is controversy among some authors that
heating at 80oC for 20 minutes might not inactivate the bacilli completely (Blackwood 2005, Doig
2002, Van Embden 1993, Warren 2006). Therefore, a sample submitted for such a procedure should be
handled as infectious material and should not be removed from containment.
Opening of ampoules containing lyophilized infectious materials
Cultures of M. tuberculosis should not be lyophilized because of the high risk of aerosol production
during ampoule preparation and opening.
Contingency plans and emergency procedures
Every laboratory that works with infectious microorganisms should institute safety precautions
appropriate to the hazard of the organisms and the animals being handled.
A written contingency plan for dealing with laboratory and animal facility accidents is a
requirement in any facility that works with or stores Risk Group 3 or 4 microorganisms (containment
laboratory - Biosafety Level 3 and maximum containment laboratory - Biosafety Level 4). National
and/or local health authorities should be involved in the development of the emergency contingency
plan.
Contingency plan
The contingency plan should provide operational procedures for:
· Precautions against natural disasters, e.g. fire, flood, earthquake, and explosion
· Biohazard risk assessment
· Incident-exposure management and decontamination
· Emergency evacuation of people and animals from the premises
· Emergency medical treatment of exposed and injured persons
· Medical surveillance of exposed persons
· Clinical management of exposed persons
· Epidemiological investigation
· Post-incident continuation of operations
In the development of this plan, the following items should be considered for inclusion:
· Identification of high-risk organisms
· Location of high-risk areas, e.g. laboratories, storage areas, animal facilities
· Identification of personnel and populations at risk
· Identification of responsible personnel and their duties, e.g. biosafety officer, safety
personnel, local health authority, clinicians, microbiologists, veterinarians, epidemiologists, and
fire and police services
· Lists of treatment and isolation facilities that can receive exposed or infected persons
· Transport of exposed or infected persons
· Lists of sources of immune serum, vaccines, drugs, special equipment and supplies
· Provision of emergency equipment, e.g. protective clothing, disinfectants, chemical and biological
spill kits, decontamination equipment and supplies
Emergency procedures for microbiological laboratories
Puncture wounds, cuts and abrasions
The affected individual should remove protective clothing, wash hands and any affected area(s),
apply an appropriate skin disinfectant, and seek medical attention if necessary. The cause of the
wound and the organisms involved should be reported, and appropriate and complete medical records
kept.
Ingestion of potentially infectious material
Protective clothing should be removed and medical attention sought. Identification of the material
ingested and circumstances of the incident should be reported, and appropriate and complete medical
records kept.
Potentially infectious aerosol release (outside a biological safety cabinet)
All persons should immediately leave the affected area and any exposed persons should be referred to
the appropriate center for medical advice. The laboratory supervisor and the biosafety officer
should be informed at once. No one should enter the room for an appropriate period of time (e.g. 1
h), to allow aerosols to be carried away and heavier particles to settle. If the laboratory does not
have a central air exhaust system, entrance should be delayed (e.g. for 24 h).
Signs should be posted indicating that entry is forbidden. After the appropriate time,
decontamination should proceed, supervised by the biosafety officer. Appropriate protective clothing
and respiratory protection should be worn.
Broken containers and spilled infectious substances
Broken containers contaminated with infectious substances and spilled infectious substances should
be treated in the same way as biological residue leaks. Infectious substances spilled onto working
areas should be covered with a cloth or paper towels. Disinfectant should then be poured over these
and left for the appropriate amount of time. The cloth or paper towel and the broken material can
then be cleared away; glass fragments should be handled with forceps. The contaminated area should
then be swabbed with disinfectant. If dustpans are used to clear away the broken material, they
should be autoclaved or placed in an effective disinfectant. Cloths, paper towels and swabs used for
cleaning up should be placed in a contaminated-waste container. Gloves should be worn for all these
procedures. If laboratory forms or other printed or written matter are contaminated, the information
should be copied onto another form and the original discarded into the contaminated-waste container.
Breakage of tubes containing potentially infectious material in centrifuges without sealable buckets
If a breakage occurs or is suspected while the machine is running, the motor should be switched off
and the machine left closed (e.g. for 30 min) to allow settling. If a breakage is discovered after
the machine has stopped, the lid should be replaced immediately and left closed (e.g. for 30 min).
In both instances, the biosafety officer should be informed. Strong (e.g. thick rubber) gloves,
covered if necessary with suitable disposable gloves, should be worn for all subsequent operations.
Forceps, or cotton held in the forceps, should be used to retrieve glass debris. All broken tubes,
glass fragments, buckets, trunnions, and the rotor should be placed in a noncorrosive disinfectant
known to be active against the organisms concerned. Unbroken, capped tubes may be placed in
disinfectant in a separate container and recovered. The centrifuge bowl should be swabbed with the
same disinfectant, at the appropriate dilution, and then swabbed again, washed with water and dried.
All materials used in the clean-up should be treated as infectious waste.
Breakage of tubes inside sealable buckets (safety cups)
All sealed centrifuge buckets should be loaded and unloaded in a biological safety cabinet. If
breakage is suspected within the safety cup, the safety cap should be loosened and the bucket
autoclaved. Alternatively, the safety cup may be chemically disinfected.
Fire and natural disasters
Fire departments and other services should be involved in the development of emergency contingency
plans. They should be told in advance which rooms contain potentially infectious materials. It is
useful to arrange visits from these services to the laboratory to acquaint them with its layout and
contents.
After a natural disaster, local or national emergency services should be warned of the potential
hazards within and/or near laboratory buildings. They should enter only when accompanied by a
trained laboratory worker. Infectious materials should be collected in leak-proof boxes or strong
disposable bags. Salvage or final disposal should be determined by biosafety staff on the basis of
local ordinances.
Emergency services: whom to contact
The telephone numbers and addresses of the following should be prominently displayed in the
facility:
· The institution or laboratory itself (the address and location may not be known in detail by the
caller or the services called)
· Director of the institution or laboratory
· Laboratory supervisor
· Biosafety officer
· Fire services
· Hospitals/ambulance services/medical staff (names of individual clinics, departments, and/or
medical staff, if possible)
· Police
· Medical officer
· Responsible technician
· Water, gas and electricity services
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